RTK-PRED

Large-scale automated prediction and classification of Receptor Tyrosine Kinases

RTK-PRED

Large-scale automated prediction and classification of Receptor Tyrosine Kinases

Downloads

Training sets for pHMMs

Training sets for the PTK pHMM

Training sets for the Juxtamembrane (JM) region pHMMs

The pHMMs have been prepared using HMMER and the HMM-ModE 3 training method.
A script implementing the method can be found in the Supplementary Material of the HMM-ModE's paper (see "Additional File 3").

RTK-PRED test sets

Test sets for the PTK pHMM

Test sets for RTK-PRED



Standalone RTK-PRED

You can find and download RTK-PRED for local use in this repository.

Requirements:
  1. Python 3 version 3.5 or newer (link)
  2. HMMER version 3.1 or newer (link)
  3. (optional) Standalone version of Phobius (link)









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