Gram-Negative Outer Membrane Modeler - Build LPS-rich membranes!


Lipid Collection


Lipopolysaccharides (LPSs)

Escherichia coli
Lipid AECLI6b
Re LPS (Lipid A and 2 x 3-Deoxy-D-manno-oct-2-ulosonic acid)REMP6
Ra LPS (Lipid A and R3 oligosaccharide core)RAMP6
Pseudomonas aeruginosa
Lipid A Type 1 (hexa-acyl)PAL66
Lipid A Type 2 (penta-acyl)PAL55
PAO1 LPS (Lipid A Type 2 and 1a core)PAO15
Helicobacter pylori
Lipid AHPLI4
Neisseria meningitidis
Lipid ANMEN6

Phospholipids

Phosphatidyl-cholines (PCs)
1-palmitoyl-2-oleyl-phosphatidyl-cholinePOPC16:0/18:1
di-oleyl-phosphatidyl-cholineDOPC18:1/18:1
di-stearoyl-phosphatidyl-cholineDSPC18:0/18:0
di-palmitoyl-phosphatidyl-cholineDPPC16:0/16:0
di-myristoyl-phosphatidyl-cholineDMPC14:0/14:0
di-lauroyl-phosphatidyl-cholineDLPC12:0/12:0
Phosphatidyl-ethanolamines (PEs)
1-palmitoyl-2-oleyl-phosphatidyl-ethanolaminePOPE16:0/18:1
di-oleyl-phosphatidyl-ethanolamineDOPE18:1/18:1
di-stearoyl-phosphatidyl-ethanolamineDSPE18:0/18:0
di-palmitoyl-phosphatidyl-ethanolamineDPPE16:0/16:0
di-myristoyl-phosphatidyl-ethanolamineDMPE14:0/14:0
di-lauroyl-phosphatidyl-ethanolamineDLPE12:0/12:0
Phosphatidyl-glycerols (PGs)
1-palmitoyl-2-oleyl-phosphatidyl-glycerolPOPG16:0/18:1
di-oleyl-phosphatidyl-glycerolDOPG18:1/18:1
di-stearoyl-phosphatidyl-glycerolDSPG18:0/18:0
di-palmitoyl-phosphatidyl-glycerolDPPG16:0/16:0
di-myristoyl-phosphatidyl-glycerolDMPG14:0/14:0
di-lauroyl-phosphatidyl-glycerolDLPG12:0/12:0
Phosphatidyl-serines (PSs)
1-palmitoyl-2-oleyl-phosphatidyl-serinePOPS16:0/18:1
di-oleyl-phosphatidyl-serineDOPS18:1/18:1
di-stearoyl-phosphatidyl-serineDSPS18:0/18:0
di-palmitoyl-phosphatidyl-serineDPPS16:0/16:0
di-myristoyl-phosphatidyl-serineDMPS14:0/14:0
di-lauroyl-phosphatidyl-serineDLPS12:0/12:0
Cardiolipins
Mono-anionic cardiolipinCDL1--
Di-anionic cardiolipinCDL2--
Notes


If you use GNOMM in your work please cite:

Fotis A. Baltoumas, Stavros J. Hamodrakas & Vassiliki A. Iconomidou (2019)
The Gram-Negative Outer Membrane Modeler: automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields
J. Comput. Chem. Jul 5; 40(18): 1727-1734,   DOI: 10.1002/jcc.25823

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