Gram-Negative Outer Membrane Modeler - Build LPS-rich membranes!

1. Choose the type of system you want to build:


Use this option to build a standard protein/membrane complex. Enter a valid PDB ID or upload a structure file of a membrane protein in PDB format to begin.

Enter PDB ID:   Source:
Please select a PDB database as source for your structure. Available options are OPM (recommended), PDB-TM and RCSB PDB.

Select PDB file (Maximum size 30 MB):

Upload pre-processed PDB and Topology (for advanced users)

2. Choose a Force Field:

If you use GNOMM in your work please cite:

Fotis A. Baltoumas, Stavros J. Hamodrakas & Vassiliki A. Iconomidou (2019)
The Gram-Negative Outer Membrane Modeler: automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields
J. Comput. Chem. Jul 5; 40(18): 1727-1734,   DOI: 10.1002/jcc.25823

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