Step 1. Paste your sequence(s) in the form below:

or upload a file with your sequence(s):

Step 2. Define search options

Inclusion theshold type:  
E-value:  
Bit-score:  

Step 1. Paste your sequence(s) in the form below:

or upload a file with your sequence(s):

Search options

Cut-off type:  
Gathering (GA)  
E-value:  
Bit-score:  

Step 1. Paste your profile HMM or sequence alignment in the form below:

or upload a file with your pHMM / alignment:
Select input format:  
profile HMM  
Alignment  

Step 2. Define search options

Cut-off type:  
Gathering (GA)  
E-value:  
Bit-score:  

Note: GA cut-offs can be used only for pHMMs with provided GA values (see the Pfam manual for more details).